![]() Jmol's categories attempt to categorize the sidechains as to their predominant characteristic. Polar: Arg, Asn, Asp, Gln, Glu, His, Lys, Ser, Thr.Hydrophobic: Ala, Cys, Gly, Ile, Leu, Met, Phe, Pro, Trp, Tyr, Val.It applies these two colors according to the definitions built into Jmol: ![]() In Proteopedia's SAT is a button hydrophobic/polar. See DRuMS for how to insert the Templates for these color keys. Composition color key (See DRuMS for how to use Templates).The following templates for color keys are currently available: Also, you can view the source of this page to see how it is done. How to insert a color key template into wikitext is is explained on the page about the DRuMS Standard Color Schemes, where you will also see examples of color keys as colored wikitext. Templates are available to make it easy to insert a color key for some of the standard color schemes that are available on buttons under the Colors tab in the Scene Authoring Tool. The ConSurf color key is used in Avian_Influenza_Neuraminidase,_Tamiflu_and_Relenza#Influenza_Virus_Neuraminidase.The amino to carboxy color key is used in NMR_Ensembles_of_Models#Display_of_NMR_Models_by_Proteopedia.Many color keys are used in the article on the Lac repressor.At present, you can put colored text or an image in the wikitext of your page. It is planned that a future version of Proteopedia will provide a mechanism to place a color key in the legend or caption beneath the molecular scene in Jmol (see Proteopedia:Wishlist), but this is not yet available. A molecular scene usually communicates best when a color key is provided.
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